FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005104843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005104843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21451573
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2044242895.29570628690026No Hit
NTGAGCCT3030781.4128474401387723No Hit
GTGAGCCT568920.2652113204006065No Hit
TTGGGCCT533150.24853655254092555No Hit
TTTAGCCT527050.24569293822881894No Hit
TGGAGCCT520790.2427747373118046No Hit
TTGAGCCG511060.2382389394008542No Hit
TTGCGCCT439090.2046889521808028No Hit
TTGAGGCT427090.1990949568127242No Hit
TTGAGCGT392310.1828816935709097No Hit
TTGATCCT331940.1547392352066676No Hit
TTGAGCCC318640.1485392236737138No Hit
TTGAGCCA274490.1279579823819913No Hit
TTGTGCCT243840.1136699858793572No Hit
TTCAGCCT220460.10277101823721738No Hit
TTGAGACT219270.10221628036321626No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)