FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005105683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005105683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114243972
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGGA387850.013.2592321
ACGGGAT270250.011.3832229
AACGGGA362700.011.2606948
AAACGGG440200.011.0271177
GAAACGG459000.010.5524856
CGGGATT268850.010.30931510
GGAAACG483850.09.9742085
CCCAAAG1807200.07.5326211
CGTGAGC487700.07.492153623
GCGTGAG477100.07.415440622
ACAGGCG685300.07.379893318
CGGGAAT173300.07.28992910
CCCAAGT805200.07.2542761
ACCGCGC161100.06.995180631
GTTGGAA865300.06.9076742
CGCCCGG259650.06.83454535
CCAAAGT1694550.06.7035492
GCCACCG444700.06.682498528
ACGCCCG136800.06.626099634
GATTTCG198350.06.61643365
Produced by FastQC (version 0.11.5)