FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3227482
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG358791.1116715755502276No Hit
TTATTATACTGCTGACAATAATAAACTGCAAAATCTTCAGACTGCAGGCT77420.2398774028793964No Hit
GTATAATAAAGGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCA63630.19715059603740626No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT41500.1285832113083822No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39260.1216428162883635No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)