FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6483951
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATACACAGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGAGAAA156980.242105469334978No Hit
TACAAATACTACGCAGACTCGGTGAAGGGCCGATTCACCATCTCCAGAGA152350.23496476145485984No Hit
GTGTATTACTGTGCGAGAGCCCTCAACAAGCGCCCAGCTGCTATGATGGG129740.20009404759536278No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC122050.18823399498238033No Hit
CTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCT92200.14219724979414558No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC82050.1265432141606252No Hit
GTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGT80820.12464622265035624No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCA78810.12154626091406304No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG70380.10854492885587816No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT69740.10755787636273006No Hit
CCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTG68230.10522904938670881No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA66050.10186690183192317No Hit
ATACTACGCAGACTCGGTGAAGGGCCGATTCACCATCTCCAGAGACAACG65460.10095696281480226No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65460.10095696281480226No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)