FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145717
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3330522.85594680099096No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4140.28411235476986213No Hit
CTGTAGGACCTGAAAAATGGCAAGAAAACTGAAAATCACGGAAAATGAGA2350.16127150572685411No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2240.15372262673538434No Hit
GTCCTACAGTGTGCATTTCTCATTTTCCACGTTTTTCAGTGATTTTGTCA2130.1461737477439146No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAAGTGGAAAATTTA1840.12627215767549427No Hit
CTGTAGGACATGGAATATGGCAAAAAATCTGAAAATCATGGAAAATGAGA1770.12146832559001351No Hit
GTCCTACAGTGTGCATTTCTCATTTTTCATGTTTTTCAGTGATTTCGTCA1770.12146832559001351No Hit
AGGTAGGACCTGGGATATAACAAGAAAACTGAAAAGCACGGAAAATGAGA1750.12009580213701901No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1610.1104881379660575No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCGGTTTTCCTCGC1600.10980187623956025No Hit
CTTTAGGACGTGAAATATGGCTAGGAAAACTGAAAAAGGTGGAAAATTTA1580.10842935278656575No Hit
CTGTAGGACATGGAATATGGCAAAAAAACTGAAAATCATGGAAAATGAGA1530.10499804415407948No Hit
CTGTAGGACATGGAATATGACAAGAAAAGTGAAAATCATGGAAAATGAGA1520.10431178242758224No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)