FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4787886
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG153230.3200368596913126No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT146000.30493624952640896No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG130100.2717274387903137No Hit
GTAATACACAGCCGTGTCCTCAGCTCTCAGGCTGTTCATTTGCAGATACA110620.23104142412747503No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC110610.23102053808298695No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG109070.22780408723181797No Hit
AATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGA95770.2000256480626314No Hit
GTGTATTACTGTGCGAAGGATCGCGGGTTTGGTAGGATAGCAGCAGCTGG77270.1613864657596275No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAG75020.1566871057498027No Hit
ACAGTACCCTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAACGA74380.15535039890256366No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT73260.15301116191989533No Hit
TTTAAGAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCG69960.14611876723881898No Hit
TCTCAGGACTGATGGGAAGCCCCGGGTGCTGCTGATGTCAGAGTTGTTCT69830.14584724866047355No Hit
GAGTTACAGTACCCTATTCACTTTCGGCCCTGGGACCAAAGTGGATATCA64710.1351535938825611No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA64500.1347149869483108No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGC64130.13394220330225073No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGG64030.13373334285736962No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG62200.12991119671604545No Hit
ATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACT60730.12684094817629327No Hit
ATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGTTCTTGATC60070.12546246924007798No Hit
GCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGG59460.12418842052630327No Hit
GATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTG59040.12331120665780262No Hit
GTATTTATTACTTCCATCATATGATATAACTGCCACCCACTCCAGCCCCT58200.12155677892080137No Hit
ATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGT56350.11769286069050099No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC55870.1166903305550717No Hit
GTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTT55160.11520742139641588No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG54640.11412134708303413No Hit
GTCCTGAGAGGGGGCAAGTACGCAGCCACCTCACAGGTGCTGCTGCCTTC52910.11050806138659108No Hit
ACGTTGTACAGGGTGGGTTTACCGGTGGACTTGTCCACGGTCCTCTCGGT51940.10848211507124439No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC51610.10779287560313675No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC50130.10470174101889643No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGT48520.10133908785631068No Hit
ACCTACACCTGCGTGGTGGCCCATGAGGCCCTGCCCAACAGGGTCACCGA48450.10119288554489392No Hit
GTTCTTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGT48280.10083782278859606No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)