FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005106920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3682793
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTATACTGTTGGCAATAATAAGCTGCAAAATCTTCAGGCTGCAGGCT257640.6995777389606204No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG187150.5081740950414536No Hit
GTATAATAATTACCCGTACACTTTTGGCCAGGGGACCAAGTTGGAGATCA180430.4899270743699144No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT92530.25124952719308413No Hit
ATTATACTGTTGGCAATAATAAGCTGCAAAATCTTCAGGCTGCAGGCTGC79150.21491840567743015No Hit
GTCTACATGGAGCTGAGCAGCCTGACATCTGAGGACACGGCCGTGTATTA76860.20870029893073003No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC76590.20796715970731994No Hit
CTCTAGAACAGTAATACACGGCCGTGTCCTCAGATGTCAGGCTGCTCAGC70530.19151225713744977No Hit
ATAATTACCCGTACACTTTTGGCCAGGGGACCAAGTTGGAGATCAGACGA62430.16951808043514802No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52220.14179455646841949No Hit
GTAATACACGGCCGTGTCCTCAGATGTCAGGCTGCTCAGCTCCATGTAGA51520.1398938251484675No Hit
GATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCG48190.1308517747264101No Hit
GTTCTAGAGAGGCTAATGCAGCTATGGTTCCGGCCCAAGACTACTACTAC47760.12968418262986817No Hit
CATGTAGACTGTGCTCGTGGACGTGTCCCTGGTCATGGTGACTCTGCCCT47540.1290868099293118No Hit
CAGTATAATAATTACCCGTACACTTTTGGCCAGGGGACCAAGTTGGAGAT47360.12859805044703843No Hit
GTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGACATTAGGAG46020.12495950763455888No Hit
CCATGTAGACTGTGCTCGTGGACGTGTCCCTGGTCATGGTGACTCTGCCC44700.12137527143122082No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGATTTCCTGCA43900.11920300706556139No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT42800.11621614356277965No Hit
AGTCAGGACACAGCATGGACATGAGAGTCCTCGCTCAGCTCCTGGGGCTC41580.11290344040514903No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG41020.11138285534918742No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG40320.1094821240292354No Hit
CTTTTGGCCAGGGGACCAAGTTGGAGATCAGACGAACTGTGGCTGCACCA39450.10711978653158077No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC38650.10494752216592136No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC38210.10375277676480867No Hit
GGTAATTATTATACTGTTGGCAATAATAAGCTGCAAAATCTTCAGGCTGC38160.10361701024195495No Hit
AGGTCACACTGAGTGGCTCCTGGGGGAAGAAGCCCTGGACCAGGCAGGCG38150.1035898569373842No Hit
GTGTACAGGTCCCCGGAGGCATCCTGGCTGGGTGGGAAGTTTCTGGCGGT37780.10258518466826673No Hit
CTATATCCACTGGGTGCGACAGGCCCCTGGGCAAGGGCTTGAGTGGATGG37440.10166197231286146No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)