FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3459155
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG129490.3743399760924272No Hit
GTAATAATCAGCCTCATCCTCAGACTGGAGTCCACCGATGGCCAGGGAGG102720.29695113401972445No Hit
GTGTACACCTGTGGCTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT93290.26969014108937006No Hit
GATTATTACTGTGCAACATGGGATGCGTCCCTGAAGGGTCTGGTTTTCGG87960.2542817537809089No Hit
GGTGTACACCCTGCCCCCATCCCAGGAGGAGATGACCAAGAACCAGGTCA65840.19033550101108507No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCC52750.15249388940362604No Hit
TCCCTGAAGGGTCTGGTTTTCGGCGGAGGGACCAAGCTGACCGTCCTACG51120.14778175594906848No Hit
GTCCTGGGCCCAGTCTGTGTTGACTCAGCCACCCTCAGCGTCTGGGACCC46270.1337609907621948No Hit
GTTCCTGATGGGTCCGTCAGTGATGACTCCTTCAACTGGATCCGCCAGTC42290.12225529067069849No Hit
GTTGGAGACCTTGCACTTGTACTCCTTGCCGTTCAGCCAGTCCTGGTGCA41980.12135911805050655No Hit
TCCTACGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCC41560.12014494869411749No Hit
GTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGT41170.11901750572032765No Hit
TATTTGGACTCAACTCTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATC40390.11676261977274797No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT39940.11546172403375969No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA39010.1127732061731839No Hit
CTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCT38690.11184812475879226No Hit
GTCTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGAT38430.11109649610959903No Hit
GTGTTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGGGGGTCAC37840.10939087725181439No Hit
GGGCAGTGGTGGGTGCTTTATTTCCATGCTGGGTGCCTGGGAAGTATGTA36170.10456310862045788No Hit
CTTGTACTCCTTGCCGTTCAGCCAGTCCTGGTGCAGGACGGTGAGGACGC36010.10410056791326205No Hit
GTGCAGGACGGTGAGGACGCTGACCACACGGTACGTGCTGTTGAACTGCT35840.10360911841186649No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT35610.10294421614527247No Hit
GTCCTGGTGCAGGACGGTGAGGACGCTGACCACACGGTACGTGCTGTTGA35610.10294421614527247No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)