FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3075040
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG102950.33479239294448204No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT96290.3131341380925126No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59650.19398121650450076No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53930.17537983245746397No Hit
CTTTAATACTTACCCGCGCTTCGGCCAAGGGACACGACTGGAGATTAAAC53860.175152193142203No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT43940.14289245017950986No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA42910.13954290025495603No Hit
GTATTAAAGTGTTGACAGTAATAAGTTGCCAAATCTTCAGGCTGCAGGGA41870.13616083042822208No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC39460.1283235340028097No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA32380.10529944325927468No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA31240.10159217441073937No Hit
ACTTATTACTGTCAACACTTTAATACTTACCCGCGCTTCGGCCAAGGGAC30860.10035641812789428No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)