FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005106988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005106988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3622809
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG111400.30749619977205533No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT61340.16931613010788038No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC57820.15959991266445456No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT54490.15040815013985004No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA52830.14582607032277992No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA46420.12813261753517782No Hit
GTTGGAGACCTTGCACTTGTACTCCTTGCCATTCAGCCAGTCCTGGTGCA44820.12371615506089335No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC44350.12241881920907231No Hit
GTATTATTGTGTCACACAGGAGGAGCGATTCAGTGACTTCCAATGGGTGT44020.12150792382375113No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC42700.11786434228246645No Hit
ACACTACCCCGTACACCTTTGGCCAGGGGACCAAGCTGGAGATCAAACGA40110.11071519365221849No Hit
GTCCTGGTGCAGGACGGTGAGGACGCTGACCACACGGTACGTGCTGTTGT38880.10732003812511232No Hit
GGGCAGTGGTGGGTGCTTTATTTCCATGCTGGGTGCCTGGGAAGTATGTA38300.1057190704781842No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)