FastQCFastQC Report
Sun 7 Aug 2022
EGAF00005107064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3771192
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATATACGGCCGTGTCCTCAGATCTCAGGCTGCTCAGCTGCATGTAGA168950.44800158676620017No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG147300.39059268263191055No Hit
GTCTACATGCAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTATATTA117960.31279234788363997No Hit
GTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCT111860.2966170908296369No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT109060.28919238267370106No Hit
GTATATTACTGTGCGAGAGATTCCCAGGGGTTTTTTGGAGTCAACTACTA102970.2730436424345406No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC86560.22952954927778801No Hit
CATGTAGACTGTGCTCGTGGACGTGTCCCTGGTCATGGTGACTCTGTCCT75420.19998981754310044No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCC73040.19367881561055494No Hit
TTATTACTGCATGCAAGCTCTACAAACTCCTAAAACGTTCGGCCAAGGGA66630.1766815372964304No Hit
ATATACGGCCGTGTCCTCAGATCTCAGGCTGCTCAGCTGCATGTAGACTG66240.17564738151756792No Hit
GGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAGC58440.15496426594031806No Hit
CCGTAGTAGTAGTAGTTGACTCCAAAAAACCCCTGGGAATCTCTCGCACA57370.1521269667521569No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT55940.14833506222966109No Hit
ATTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATG53880.1428725983720797No Hit
ATCCATTACTATGCAGGAGGCTCTGACTAGACCTGCAGGAGATGGAGGCC53770.1425809134088108No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT53020.1405921522956137No Hit
GATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCT52470.13913372747926916No Hit
CTACTACGGTGTGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCT50740.1345463185114945No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCA50580.13412204947401246No Hit
GGATACACCTTCACCAATTATTATATGCACTGGGTGCGACAGGCCCCTGG48110.12757239620788333No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG47490.1259283536876404No Hit
GTGTACACCTGTGGTTCTCGGGGCTGTCCTTTGGTTTTGGAGATGGTTTT46670.12375397487054492No Hit
GCCGTATATTACTGTGCGAGAGATTCCCAGGGGTTTTTTGGAGTCAACTA43560.1155072454544876No Hit
GCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGC43150.11442005604593984No Hit
TTCCAGGACAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTA42680.11317376574833633No Hit
GTCCTGGAACTTCTGTGCGTAGCTTGTGCTACGACCACTAGGGCTGATTA42280.11211309315463122No Hit
GTTTATTACTGCATGCAAGCTCTACAAACTCCTAAAACGTTCGGCCAAGG42180.11184792500620493No Hit
CAGTAATAAACTCCAATATCCTCAGCCTCCACTCTGCTGATTTTCAGTGT41380.1097265798187947No Hit
GTAATAAACTCCAATATCCTCAGCCTCCACTCTGCTGATTTTCAGTGTAA41080.10893107537351585No Hit
TGTGTGAGTTGTGTCACCAAGTGGGGTTTTGAGCTCAACTCTCTTGTCCA40400.10712793196421715No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG40140.10643849477830881No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC39750.10540433899944633No Hit
GCATGTAGACTGTGCTCGTGGACGTGTCCCTGGTCATGGTGACTCTGTCC39710.10529827174007582No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA38820.10293827521908193No Hit
CTCCTAAAACGTTCGGCCAAGGGACCAAGGTGGAAATCAAACGAACTGTG38520.10214277077380308No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC38210.10132074951368163No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)