FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4686932
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG251510.5366196906633166No Hit
GTAATACACAGCCGTGTCCTCGGCTCTCAGACTGTTCATTTGCAGATACA150760.32166030998529527No Hit
GTGTATTACTGTGCAAGAGATTTTGGGTGGCTGGATAATGACTACTGGGG116180.24788070319774216No Hit
TATTAATAGTGATGGGAATAGCACAAGCTACGCGGACTCCGTGAAGGGCC107600.22957448497225902No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT81580.17405842457283358No Hit
CTATTAATACGTGAGACCCACACCAGCCCCTTCCCTGGAGCTTGGCGGAC68650.14647108172254258No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC66870.14267328819790856No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA65320.1393662208028621No Hit
GAATAGCACAAGCTACGCGGACTCCGTGAAGGGCCGATTCACCATCTCCA64850.13836343262500927No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA61400.13100254068119613No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC58590.12500714753275705No Hit
GTTGGAGACCTTGCACTTGTACTCCTTGCCATTCAGCCAGTCCTGGTGCA55710.11886240295357389No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT52610.11224826816348094No Hit
GTAATAATCGGCCTCGTCCCCAGTCTGGAGTCCGGTGATGCCCAGGGTGG50020.10672226522595164No Hit
TTTAAAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCCGGGGGAGGCT49720.10608218766562008No Hit
GCCTTGGGCTGACCGAGGACGGTCAGCTGGGTGCCTCCTCCGAACACAGC49410.10542077418661078No Hit
GTCCTGGTGCAGGACGGTGAGGACGCTGACCACACGGTACGTGCTGTTGT47940.10228439414098606No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA47560.10147362923123271No Hit
CTTGTACTCCTTGCCATTCAGCCAGTCCTGGTGCAGGACGGTGAGGACGC47030.1003428255413136No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)