FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4484130
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG246480.5496718426985837No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT79050.17628837700958713No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA71600.15967422889166907No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG62550.13949194158064107No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC56670.1263790300459621No Hit
ACCTTAACCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAA53440.11917584904987144No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG49040.10936346626881914No Hit
ATCTATTACAGTGGGAGTATAAATTACAACCCCTCCCTCAAGAGTCGAGT45930.10242789571221173No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT45430.1013128522143649No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)