FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4484296
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG114350.25500100796200786No Hit
GTATAATAGTAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCT78930.17601425062038722No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA67670.15090440060156599No Hit
GATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTCATGTGGTATT63510.1416275821221436No Hit
ATAGTAATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAG59800.13335426564169717No Hit
GTAATACACGGCCGTGTCGTCAGATCTCAGGCTCCTCAGCTCCATGTAGG54890.1224049438306481No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG54740.12207044316432279No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG54670.12191434285337097No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC53240.11872543650106951No Hit
CTATTATACATGAGGAGTTTGGGGGCCGTTCCTGGGAGCTGCTGGTACCA50440.11248142406299674No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG47230.10532310980363473No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC45900.10235720389555016No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)