FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4324942
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT119100.27537941549273953No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG97630.22573713127251185No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC97000.22428046433917492No Hit
ATAATACACAGCCGTGTCCTCGGCTCTCAGACTGTTCATTTGCAGATACA73180.16920458124062704No Hit
GAGTTACAGTATCCCTCAGACGTTCGGCCAAGGGACCAAGGTGGAAATCA69210.16002526739086906No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT66610.154013626078685No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGACCATTACCAC61590.1424065340066988No Hit
GATCTATGCTGCATCCCGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTG59780.13822150678552453No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT58270.13473013048498683No Hit
GCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGG54070.12501901759607412No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA53470.12363171575480088No Hit
GTGTATTATTGTACAAGAGGGCGCGCGGAGTGGCTGGTACAAGGTGACCA52820.12212880542675486No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG51210.11840621215267165No Hit
GTATTATTGTACAAGAGGGCGCGCGGAGTGGCTGGTACAAGGTGACCATA51120.11819811687648066No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC49490.11442928020768833No Hit
CTGTAACTCTGTTGACAGTAGTAAGTTGCAAAATCTTCAGGTTGCAGACT48740.11269515290609677No Hit
GTTGGAGACCTTGCACTTGTACTCCTTGCCATTCAGCCAGTCCTGGTGCA48650.1124870576299058No Hit
GTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTT47310.10938875018439553No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC46910.10846388229021338No Hit
CAATAATACACAGCCGTGTCCTCGGCTCTCAGACTGTTCATTTGCAGATA45940.10622107764682162No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC45150.10439446355581185No Hit
CTCCTGATCTATGCTGCATCCCGTTTGCAAAGTGGGGTCCCATCAAGGTT44720.10340023056956602No Hit
CTATTTAGGTTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGA43780.10122679101823794No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)