FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4867412
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC101720.20898169294072494No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT90400.18572498074952357No Hit
TTATTATAGTCCTCTGTACATTTTTGGCCAGGGGACCAAACTGGAGATCA82070.16861116338621016No Hit
CTTTTATACACCTCCAACGATAAGAATTACTTAGCTTGGTACCAGCAGAG78790.1618724693944133No Hit
TTATAGTCCTCTGTACATTTTTGGCCAGGGGACCAAACTGGAGATCAGAC54450.11186642922357919No Hit
CCCTCACACTGACCTGTACCTTCTCTGGGTTCTCACTCACCAGTGATCAA52190.1072233047048411No Hit
CATTTATTGGGATGATGATAAGCGCTACAACCCGTCTCTGACAAACAGGC51110.10500446643924943No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)