FastQCFastQC Report
Mon 8 Aug 2022
EGAF00005107396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4867412
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG137200.2818746389251619No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT90110.1851291815856147No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC84470.17354191508752495No Hit
TTATTATAGTCCTCTGTACATTTTTGGCCAGGGGACCAAACTGGAGATCA83880.17232977196095173No Hit
CTTTTATACACCTCCAACGATAAGAATTACTTAGCTTGGTACCAGCAGAG63310.13006912092093295No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT58940.12109104386478892No Hit
TTATAGTCCTCTGTACATTTTTGGCCAGGGGACCAAACTGGAGATCAGAC55540.11410581228792631No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA49330.10134749226077432No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA48820.10029970752424493No Hit
CCCTCACACTGACCTGTACCTTCTCTGGGTTCTCACTCACCAGTGATCAA48730.10011480433544562No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)