FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4626044
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG169970.3674197651384206No Hit
ATGTATTACTGTGCGAGAGATGAGGGTTCTTATGATGCTGGGAGTGGTCT117350.2536724683120178No Hit
GTAATACATAGCCGTGTCCTCGACGGTCAGGCTGTTCATTTGTAGGTAGG107740.23289877917287427No Hit
ATATTACGCAGACCCGGTGCAGGGCCGATTCACCATTTCCAGAGACAACT73390.1586452701271324No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA54240.11724920904340728No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT50300.10873221266377925No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT48750.10538161764133674No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)