FastQCFastQC Report
Sun 7 Aug 2022
EGAF00005107535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4970526
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA88510.17806968518020025No Hit
CCCTTAGAGTCTCCTGTGCAGCGTCTGGATTCGCCTTGAGTAACACCTGG72760.1463828979065797No Hit
GTATTATTGTGTCACACAGGAGGAGCGATTCAGTGACTTCCAATGGGTGT69300.13942186400393036No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT67220.13523719622430302No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA64450.12966434538316468No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT62990.12672703049938777No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC61620.12397078297146015No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC61600.12393054578127144No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA60110.12093287511221146No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC58800.11829733915485001No Hit
GTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGT57950.11658725857182921No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC54140.1089220738408772No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT53580.10779543251559293No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG52400.10542143829445819No Hit
GTGTATTATTGTGTCACACAGGAGGAGCGATTCAGTGACTTCCAATGGGT52180.1049788292023822No Hit
CCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTG50570.10173973539218989No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG49810.10021072216501836No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)