FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3072326
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATAGACGGCCGTGTCCTCAGACTTCAGGCTGCTCAGGTCCATGTAGA78480.25544164258610574No Hit
ACTATATACACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATG73750.24004614093686674No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG69930.22761256455206902No Hit
CTATATACACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGG59670.1942176709112249No Hit
GTCTATTACTGTGCGAAAGATTGTGGTGGTGGTGACTTCATTATTTTGGG56270.18315113695616936No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC50250.16355686212986512No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG49450.16095297178749912No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGT38990.12690710556106352No Hit
GTCTACATGGACCTGAGCAGCCTGAAGTCTGAGGACACGGCCGTCTATTA35920.11691467637223393No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT32740.10656421226132903No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT31650.10301641166985534No Hit
TCTCAGGACTGATGGGAAGCCCCGGGTGCTGCTGATGTCAGAGTTGTTCT31060.1010960425423604No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA30930.10067291036172593No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)