FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005107629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3609125
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTAATACTTACCCGCGCTTCGGCCAAGGGACACGACTGGAGATTAAAC71840.1990510165206248No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT64140.17771620545145986No Hit
TGATTATACCATGCACTGGGTCCGTCAAGGTCCGGGGAAAGGTCTGGAGT59460.16474907352890242No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC58130.16106396979877394No Hit
GTATTAAAGTGTTGACAGTAATAAGTTGCCAAATCTTCAGGCTGCAGGGA52650.14588023412877082No Hit
GTATTATTGTGCAAAAGATAAGGGCAGTGGCTGGTACCGCTGGTTCTTCG37970.10520555536314204No Hit
ACTTATTACTGTCAACACTTTAATACTTACCCGCGCTTCGGCCAAGGGAC36780.10190835728881653No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)