FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005107637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3878029
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAATAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGA157670.4065725140270999No Hit
GTAATATACGGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATACA140700.3628131713300752No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT113810.29347382394510196No Hit
GTATATTACTGTGCGAAAGGAGACGGGTATTACGATATTTTGACTGGTTC113650.29306124322432864No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC95360.2458981095809237No Hit
TTATTATACTGCTGACAGTAATAAACTGCAAAATCCTCAGACTGCAGGCT94840.24455722223841028No Hit
GTTATTATACTGCTGACAGTAATAAACTGCAAAATCCTCAGACTGCAGGC86790.22379925472450052No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT67920.17514051596829214No Hit
GTCTCCAGGCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCT64570.16650210712709987No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTC64300.16580587716079484No Hit
TTATTACTGTCAGCAGTATAATAACTGGCCTCCGCTCACTTTCGGCGGAG61960.15977188411948443No Hit
ATATACGGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATACAGCG60730.1566001698285392No Hit
ACCACACACTACGCAGACTCCGTGAAGGGCCGGTTCACCATGTCCAGAGA60600.15626494799291082No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC56160.14481583299145004No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA56150.1447900466964017No Hit
CTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCTTCCTCT56140.14476426040135337No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG56080.14460954263106335No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT55720.1436812360093233No Hit
GTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGT54650.14092210243915143No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC52260.13475917792259934No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC49340.12722957976848548No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT49150.1267396401625671No Hit
GTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAGGATT49020.12640441832693877No Hit
CTACGCAGACTCCGTGAAGGGCCGGTTCACCATGTCCAGAGACAATTCCA48280.12449623249336196No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG47010.1212213730222234No Hit
GCCGTATATTACTGTGCGAAAGGAGACGGGTATTACGATATTTTGACTGG46730.12049935676087002No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG46490.11988048567970998No Hit
CCTTCCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTG46290.11936475977874328No Hit
CATCTATGGTGCATTCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTG46020.11866852981243822No Hit
GGGCAGTGGTGGGTGCTTTATTTCCATGCTGGGTGCCTGGGAAGTATGTA43960.11335655303248118No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA42590.10982383061085928No Hit
ATATTACTGTGCGAAAGGAGACGGGTATTACGATATTTTGACTGGTTCGG41370.1066779026149624No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40860.1053628015674973No Hit
CACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGA40660.1048470756665306No Hit
GACCTACATCTGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGACA40570.10461499901109558No Hit
CCCTCATGATCTCCCGGACCCCTGAGGTCACATGCGTGGTGGTGGACGTG40280.10386719645469387No Hit
CCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAA40120.10345461573392052No Hit
GTCCAGAGACAATTCCAACAACACGCTGTATCTGCAAATGAACAGCCTGA39980.1030936076032438No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG39890.1028615309478088No Hit
CTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACT39870.10280995835771213No Hit
CTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGC38990.10054076439345863No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)