FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005107673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2403087
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64280.2674892752530391No Hit
GTATGATAGTTACCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCA42870.17839553873829786No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT42560.17710553134364257No Hit
CTATCATACTGTTGGCAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCG41720.17361002743554438No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37160.15463443479158268No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC36640.15247055141990282No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33830.14077725858447904No Hit
ATCATACTGTTGGCAGTAATAAGTTGCAAAATCTTCAGGCTGCAGGCGGC28160.11718260720481614No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA26690.11106547536564428No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG25030.104157693832974No Hit
GTAATACATGGCGGTGTCCGAGGCCTTCAGGCTGCTCCACTGCAGGTAGG24490.10191058417776801No Hit
ATGTATTACTGTGCGAGACATGGATTTCATGACTATTGGGGCCAGGGAAC24420.1016192921854265No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)