FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2861221
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42600.1488874854476463No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39750.13892670297051501No Hit
CTATTATATGGACGTGTGGGGCACAGGGACCACGGTCACCGTCTCCTCAG35120.12274480020942108No Hit
AATCAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGA33020.11540527627890332No Hit
TCCTAAGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCC31290.10935890656471486No Hit
ATAATACACAGCCGCGTCTTCACCTCTCAGGCTGTTCATTTGCAGATACA30040.10499014232035904No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)