FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005107710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3985763
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTATACTGTTGGCAATAATAAGCTGCAAAATCTTCAGGCTGCAGGCT248450.6233436358358487No Hit
GTATAATAATTACCCGTACACTTTTGGCCAGGGGACCAAGTTGGAGATCA177800.44608773778069594No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT87170.21870342014816235No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG81770.20515519864076215No Hit
ATTATACTGTTGGCAATAATAAGCTGCAAAATCTTCAGGCTGCAGGCTGC73810.1851841165668907No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65930.16541374888572152No Hit
ATAATTACCCGTACACTTTTGGCCAGGGGACCAAGTTGGAGATCAGACGA65300.1638331230431915No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC63730.1598941030864103No Hit
GTCTACATGGAGCTGAGCAGCCTGACATCTGAGGACACGGCCGTGTATTA52570.13189444530444988No Hit
CTCTAGAACAGTAATACACGGCCGTGTCCTCAGATGTCAGGCTGCTCAGC51200.12845721132942425No Hit
CAGTATAATAATTACCCGTACACTTTTGGCCAGGGGACCAAGTTGGAGAT45310.11367961416672293No Hit
GATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAAGTTCAGCG42900.10763309308656838No Hit
CTTTTGGCCAGGGGACCAAGTTGGAGATCAGACGAACTGTGGCTGCACCA41620.10442166280333276No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT41320.1036689838306994No Hit
GTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGACATTAGGAG40470.10153639340823827No Hit
GGTAATTATTATACTGTTGGCAATAATAAGCTGCAAAATCTTCAGGCTGC40440.10146112551097494No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG39990.10033210705202492No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)