FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005107815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2939862
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTATTACTGTGCGAGAGATGAGGGTTCTTATGATGCTGGGAGTGGTCT67160.22844609712972921No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT57710.19630173116969435No Hit
GTAATACATAGCCGTGTCCTCGACGGTCAGGCTGTTCATTTGTAGGTAGG57370.19514521429917459No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55620.18919255393620518No Hit
ATATTACGCAGACCCGGTGCAGGGCCGATTCACCATTTCCAGAGACAACT48180.1638852435930666No Hit
GTCCCCAGACACCCTGTGTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCT46640.1586469024736535No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC45600.15510932145794598No Hit
ATGCTACTTCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAACGA35510.12078798256516803No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG35280.12000563291746347No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33210.1129644860881225No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC32180.10946092027448909No Hit
GTCTATTACTGTCAACAGTATGCTACTTCGATCACCTTCGGCCAAGGGAC32110.10922281385997029No Hit
TTTAAGAGGTGTCCAGTGTCAGGTGCAACTGGTGGAGTCTGGGGGAGGCG31030.10554917203596632No Hit
CTATTACTGTCAACAGTATGCTACTTCGATCACCTTCGGCCAAGGGACAC29770.10126325657462833No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)