FastQCFastQC Report
Sun 7 Aug 2022
EGAF00005107854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3577562
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT81870.22884299419548845No Hit
GTAATATACAGCCGTGTCCTCGGCTCTCAGGCTGTTCATTTGCAGATACA73070.20424523739910028No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG63220.17671252098496126No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC53790.1503537884179226No Hit
GTATGGTAACTCACCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCA49710.13894937390323353No Hit
GTATATTACTGTGCGAGCGATTATTATGATAGAAGTGCTCATTTCTCCTC48320.1350640464092586No Hit
GTTTTACTGTCAGCAGTATGGTAACTCACCGTGGACGTTCGGCCAAGGGA45850.1281599033084542No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG44160.12343601592369327No Hit
GTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCT43180.12069672028045915No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG42690.1193270724588421No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT41770.11675548879376514No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATT41650.11642006483745075No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC40510.1132335372524641No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36670.10249997065040382No Hit
CATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTG36240.10129803480694395No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)