FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005107924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005107924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5464959
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATATAGGGCCGTGTCGTCAGATGTCAGATTCCTCAATTCCATATAAA126780.23198710182455165No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT107300.19634182067971598No Hit
ATATAGGGCCGTGTCGTCAGATGTCAGATTCCTCAATTCCATATAAACTG105050.1922246809170938No Hit
CTATATTACTGTGCGAGAGATAGGGAGACTTATTATGGTAGAGGCCTTAA84630.1548593502714293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG83430.15266354239803082No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC78510.14366073011709693No Hit
GGTATAAGGACAGACTCAACATGACCAAAGACACATCCACGAACACAGTT70620.1292232933495018No Hit
ATATTACTGTGCGAGAGATAGGGAGACTTATTATGGTAGAGGCCTTAATC58090.10629539947143245No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT57510.10523409233262318No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)