FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005108013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005108013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4203044
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGCTTT104090.24765384326216905No Hit
GTCTTAATTATATATAAAGACACTGAGAGGCCCTCAGGGATCCCTGAGCG76240.18139234326359657No Hit
TATAAAAGGTGTCCAGTGTCAAGCGCAACTGGTGGAGTCTGGGGGAGGCT75440.1794889608578925No Hit
GTTCATATAGTGGTCACTGAAACTGAATCCAGAGGCTGCACAGGAGAGTC70090.16676009101974665No Hit
GTTCCCACCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGT65460.1557442653467344No Hit
ATAATAGGCAGCCTCGTCCTCTGCCTGGACTCCACTGATGGTCAACGTGA60690.14439534775272397No Hit
TCCTAAGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCC59980.14270609586766164No Hit
AATTAAGACAGGGGCCTGGCCTGGCTTCTGCTGGTACCAATATTCATATT57950.1378762630131876No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA54990.1308337481120826No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT53100.12633700717860674No Hit
GACTTAGGACGGTCAACTTGGTCCCTCCGCCGAACACCCGATAAGTACCA52380.1246239630134731No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT51800.12324401076933766No Hit
TATTTATTGAGGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGG50220.11948483051807215No Hit
GCCTATTATTGTCAATCAGCTGACAGCAGTGGTACTTATCGGGTGTTCGG50010.11898519263657482No Hit
CTATTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTTTT47000.11182371633511332No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA46060.10958724200841104No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)