FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005108114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005108114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1346939617
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAGTT622950.0104.506242
CCCGAGT797950.0103.893541
CGAGTTC648850.098.08963
GGTCCCA334850.098.025891
GGCCCCA1364700.097.3826751
AGATACT1882500.092.616545
AGACGAC548350.085.575441
CCAGGAT349950.083.9365542
CCAGCCT2239450.081.457361
CGGCCTC1315250.081.38341
GGACCCA370450.079.995391
GGCCCCT1174600.079.786371
CCAAGTT723000.079.518892
CGGCTCA1225500.079.238691
CAGCCTC2751100.078.851181
GGACCTC331750.078.080241
GGACCCT295300.077.921291
CTGGCCT572850.077.8578342
CCGGATT563600.077.4365842
GGCCCTA853450.076.207951
Produced by FastQC (version 0.11.5)