FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005108162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005108162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences968965
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT29380.3032101262687507No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27380.28256954585562943No Hit
CATCTATAGTGCCTCCCTCAGGGCCCCTGGCATCCCAGACAGGTTTAGTG25830.26657309603546053No Hit
GTATTATTGTCAGCAGTATGGGAGCTCACCTCAGACGTTCGGCCAAGGGA25550.2636834147776235No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC23400.24149479083351824No Hit
GTAATAGACGGCCGTGTCCTCAGAACTCAGGCTGCTCAACTCCATGTAGG23120.2386051095756813No Hit
GTGTTGATGCAGTCCCCAGGCACCCTGTCTTTGCTTCCAGGGGAAAGAGC21420.22106061622452822No Hit
GTCTATTACTGTGCGAGAGATATGGGGGAGACCACAACTATGGTCCGTCC19040.19649832553291396No Hit
CAATAATACACTGCAAAGTCTTCTGTCTCCAGTCTGCTGATGGTGAGAGT18100.186797252738747No Hit
GTATGGGAGCTCACCTCAGACGTTCGGCCAAGGGACCAAGGTGGAAATCA16700.17234884644956217No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT14280.1473737441496855No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCA13850.14293601936086442No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC12720.13127409142745095No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGACAGAAGACT12610.13013885950472928No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC12330.1272491782468923No Hit
GAGTATTAGCAGCACCTACTTGGCCTGGTACCAGCAAAAGCCTGGCCAGG12130.12518512020558017No Hit
ATAATACACTGCAAAGTCTTCTGTCTCCAGTCTGCTGATGGTGAGAGTGA11290.11651607643206927No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC11150.11507123580315078No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC10900.11249116325151064No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT10890.11238796034944504No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG10840.11187194583911698No Hit
CTATAGATGAGGAGCCTGGGAGCCTGGCCAGCCTGGCCAGGCTTTTGCTG10250.10578297461724623No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA10210.10537016300898382No Hit
GGTTTAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGA9830.10144845273049079No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG9770.10082923531809715No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT9760.10072603241603154No Hit
CTCCCATACTGCTGACAATAATACACTGCAAAGTCTTCTGTCTCCAGTCT9720.10031322080776911No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)