FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005108655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005108655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2365566
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT59710.2524131645449757No Hit
CTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGG56010.23677208752577605No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC53100.22447059181608123No Hit
GTAATACACGGCCGTGTCGTCAGATCTCAGCCTGCTCAGCTCCATATAAG34450.14563110900308848No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC32740.13840239502935026No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC32390.13692283368969624No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAG30270.12796091928950618No Hit
GCTTATATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTA28900.12216949347428903No Hit
GTGTATTACTGTGCGAGGGGAATAGTGGGACAATTCCCCCCTGACCACTG27670.11696989219493348No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC27520.11633579447793889No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT26660.1127003009005033No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCA26300.1111784663797163No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA26210.11079800774951958No Hit
ATGCTACATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGT26030.11003709048912608No Hit
GAGTTACAGTACCCCTCAAACTTTTGGCCAGGGGACCAAGCTGGAGATCA25730.1087688950551369No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT25050.10589431873809481No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCA24920.10534476738336618No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC24750.10462612330410567No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG24350.10293519605878677No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG23940.10120199563233494No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)