FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005108958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005108958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1934861
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72680.37563421868547664No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA21360.11039552712055285No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA20500.10595076338817105No Hit
GTATTAGAGGCACCGCCTGCCCAATGACACATGTTTAACGGCCGCGGTAC19960.10315986523062896No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG19710.10186778275028542No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)