FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005109726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005109726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1414224
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG157731.1153112943918362No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT33470.23666689293916662No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC28680.2027967280996504No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG27910.197352046069081No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA26090.18448279763318964No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC22160.1566937062304133No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT19650.1389454570138818No Hit
GTATATTACTGTGCGAGAGCACGCTCGGGGATTTCGGCTATTCATGGTGT19020.13449071717068867No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA18160.1284096437339488No Hit
GTCCTGATCTATGCTGTATCTAGTTTGCAAAGTGGGGTCCCATCAAGGTT17570.12423774451572028No Hit
GATCTATGCTGTATCTAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTG16980.12006584529749176No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG16760.11851022186018623No Hit
TCTATAGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATAT15630.11051997420493499No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT15330.10839866951770016No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC14950.10571168358053604No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAG14680.10380250936202469No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)