FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005109775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005109775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2757816
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGT53110.1925799255642871No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49400.179127251419239No Hit
ATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTCTT36580.13264119143554176Illumina PCR Primer Index 10 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCGCGTATGCCGT30830.11179135953957768No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)