FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005109819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005109819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2449625
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT92290.3767515436036128No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC88060.35948359442771854No Hit
ATCTATTACAGTGGGAGCACCAAGTACAACCCCTCCCTCAAGAGTCGAGT78420.3201306322396285No Hit
GTCTCTGGTGGCTCCATAAGTAGTCACTACTGGAGCTGGATCCGGCAGCC53320.2176659692810124No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC51920.21195080879726486No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAG49820.2033780680716436No Hit
GTGTATTACTGTGCGAGAGGGAAAACCGGGTATAGCAGCAGGAACCACTG48860.1994591008827882No Hit
GTAATACACGGCCGTGTCCGCAGCGGTCACAGAGCTCAGCTTCAGGGAGA46750.190845537582283No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC46400.18941674746134612No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC45260.1847629739245803No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT41800.17063836301474716No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCA37590.15345205898862072No Hit
GCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGG37490.1530438332397816No Hit
GTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG36620.14949226922488137No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA35720.1458182374853294No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT35710.14577741491044546No Hit
CTATTACAGTGGGAGCACCAAGTACAACCCCTCCCTCAAGAGTCGAGTCA35460.1447568505383477No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG35400.14451191508904423No Hit
GATCTATGCTGCATCCAGTTTGCATAGTGGGGTCCCATCAAGGTTCAGTG35010.14291983466857172No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG34940.14263407664438435No Hit
GGGTATATCTATTACAGTGGGAGCACCAAGTACAACCCCTCCCTCAAGAG34760.14189927029647395No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT34380.14034801245088535No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC33590.13712302903505638No Hit
GTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTT33350.13614328723784253No Hit
GCATAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATT32250.13165280400061233No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC31270.12765219166198907No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC31030.12667244986477522No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA30910.1261825789661683No Hit
ATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATC29760.12148798285451855No Hit
GCGTCAGGGTGCTGCTGAGGCTGTAGGTGCTGTCCTTGCTGTCCTGCTCT28920.11805888656427004No Hit
GTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGACTTCGC28450.11614022554472622No Hit
CCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCAGCAGGCACACAA28360.11577282237077104No Hit
CTCCTGATCTATGCTGCATCCAGTTTGCATAGTGGGGTCCCATCAAGGTT27600.11267030667959381No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG27380.11177221003214777No Hit
GTCCTTGCTGTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGA26890.10977190386283614No Hit
GTCCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTTCT26570.10846558146655101No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG25920.1058121140990968No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA25650.1047099045772312No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT25560.10434250140327601No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT24770.10111751798744706No Hit
GTATTACTGTGCGAGAGGGAAAACCGGGTATAGCAGCAGGAACCACTGGT24760.10107669541256316No Hit
GTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGT24680.10075011481349187No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)