FastQCFastQC Report
Fri 27 May 2022
EGAF00005110091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005110091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113363401
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTATTCCATCTCTCTCGGTGCAGGAGGCGGCGGGTGGGGGGCTGCCTG1919080.1692856762474866No Hit
CCTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCA1715760.15135043451986765No Hit
CACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGCA1462650.12902312272723718No Hit
CTCGTTCCCCGCACACTAGGTAGAGAGCTTCCACCAGGTGTGAGCCGCAC1390110.12262423213643704No Hit
CCCAGCTCCACCTGCCCCACCTGCAGGTCCTCTGCCTCCCGGCGGGTCTT1373990.12120225644959258No Hit
CTGCAGGCTGCCTGCACCAGGGCCCCCGCCCAGCTCCACCTGCCCCACCT1207490.10651497655755758No Hit
CCACGCTTCTGCAGGGACCCCTCCAGGGCCAAGGGCTGCAGGCTGCCTGC1136310.10023605413884858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)