FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005110245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005110245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5611403
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATTATACCATGCACTGGGTCCGTCAAGGTCCGGGGAAAGGTCTGGAGT174970.31181150239966726No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC108060.19257216065215776No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT104680.1865487116145463No Hit
CTTTAATACTTACCCGCGCTTCGGCCAAGGGACACGACTGGAGATTAAAC103270.18403597103968472No Hit
CTCTTATTAGTTGGGATGGTGGTAGCACATCCTATGCAGACTCTGTGAAG92450.16475380577727175No Hit
CAATAATACAAGGCGGTGTCCTCAGATCTCAGACTGTTCATTTGCAGATA87570.15605722846853096No Hit
GTATTATTGTGCAAAAGATAAGGGCAGTGGCTGGTACCGCTGGTTCTTCG87300.15557606537972768No Hit
ATACAAGGCGGTGTCCTCAGATCTCAGACTGTTCATTTGCAGATACAGGG82080.14627357899619756No Hit
GTGGTAGCACATCCTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCC79620.14188964863154546No Hit
TTTAAAAGGTGTCCAGTGTGAAGTGCAGCTGGTGGAGTCTGGGGGAGTCG75500.13454745631351017No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT74230.13228420771062066No Hit
ACCATGCACTGGGTCCGTCAAGGTCCGGGGAAAGGTCTGGAGTGGGTCTC72920.1299496756871677No Hit
GTCTGAGATCTGAGGACACCGCCTTGTATTATTGTGCAAAAGATAAGGGC71930.12818541102822234No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC68170.12148476949525813No Hit
ATAATACAAGGCGGTGTCCTCAGATCTCAGACTGTTCATTTGCAGATACA65810.11727904768201465No Hit
GTATAATCATCAAAGGTGAATCCAGAGGCTGCACAGGAGAGTCTCAGGGA63150.11253870021454528No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA63110.11246741679398183No Hit
GTATTAAAGTGTTGACAGTAATAAGTTGCCAAATCTTCAGGCTGCAGGGA63030.11232484995285492No Hit
ATCCTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACA62070.11061404785933215No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA60730.1082260532704566No Hit
GTACAACAGCACGTACCGTGTGGTCAGCGTCCTCACCGTCCTGCACCAGG58660.10453713625629812No Hit
GTGGTGGACGTGAGCCACGAAGACCCTGAGGTCAAGTTCAACTGGTACGT56350.10042051871875891No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)