FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005110280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005110280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3362918
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATACATAGCCGTGTCTGCGGCGGTCACAGAGCTCAACTTCAGGGAGA50850.1512079687937678No Hit
ATGTATTACTGTGTGAGACATGTTGCAGCAGGTGGACAGGACGGTTTTGA48600.14451735070554797No Hit
ATTACAACCCGTCCCTCCAGAGTCGAGTCACCGTTTCCGTAGACACGTCC40250.11968772357815445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39400.11716015674482695No Hit
CAGTAATACATAGCCGTGTCTGCGGCGGTCACAGAGCTCAACTTCAGGGA34040.10122161765466776No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)