FastQCFastQC Report
Mon 8 Aug 2022
EGAF00005110415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005110415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5609797
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG205510.3663412419379881No Hit
GTAATAAAAGGCCGTGTCCTCGGGTCTCAGGCTGTTCATTTGCAGATACA149630.26672979432232574No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGT137070.24434039235287836No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG136650.24359170215963252No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT109000.1943029311042806No Hit
TATAAAAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCT102700.18307257820559283No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC101470.1808799854968014No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGG98250.1751400273485832No Hit
TCTCAGGACTGATGGGAAGCCCCGGGTGCTGCTGATGTCAGAGTTGTTCT97610.17399916610173238No Hit
CTCCTGTACAGCCTCTGGATTCACCTTCAGTGACTACGACATGAGCTGGA93330.1663696565134175No Hit
CTCCTGGACCCGCCAGAATGGCGAAGCTGTGAAAACCCACACCAACATCT83800.1493815195095295No Hit
CCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGTG79230.14123505716873536No Hit
CTTTTATTACTGTGCGAGAATTCACTACGGAAAACATGGTTCTGACTACT77940.13893550871805166No Hit
CTCCATGTGTGTCCCCGATCAAGACACAGCCATCCGGGTCTTCGCCATCC75880.13526336157975055No Hit
TAGTAGTACTTACACAAACTACGCAGACTCTGTGAAGGGCCGATTCACCA74520.13283903143019257No Hit
AGCCTGGAGGGTCCCTGAGACTCTCCTGTACAGCCTCTGGATTCACCTTC66280.11815044287698823No Hit
ATCTCACCCCGTTGACACGGTTAGTTTGCATGCACACACAGAGCGGCCAG63880.11387221320129765No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGC63710.11356917193260292No Hit
TTTTATTACTGTGCGAGAATTCACTACGGAAAACATGGTTCTGACTACTG61230.10914833460105597No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)