FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005110416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005110416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5609797
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG183070.3263397944702812No Hit
GTAATAAAAGGCCGTGTCCTCGGGTCTCAGGCTGTTCATTTGCAGATACA147810.26348547015159374No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG119340.2127349706237142No Hit
TCTCAGGACTGATGGGAAGCCCCGGGTGCTGCTGATGTCAGAGTTGTTCT111990.1996328922419118No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT107630.19186077499774057No Hit
TATAAAAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCT98700.17594219541277517No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGG95030.16940006920036502No Hit
CTCCTGTACAGCCTCTGGATTCACCTTCAGTGACTACGACATGAGCTGGA89560.1596492707311869No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGC84950.15143150456246457No Hit
GTCCTGAGAGGGGGCAAGTACGCAGCCACCTCACAGGTGCTGCTGCCTTC83600.1490250003698886No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC79310.1413776648245917No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGT74750.1332490284407796No Hit
CTCCATGTGTGTCCCCGATCAAGACACAGCCATCCGGGTCTTCGCCATCC68740.12253562829457108No Hit
ACGTTGTACAGGGTGGGTTTACCGGTGGACTTGTCCACGGTCCTCTCGGT66990.11941608582271337No Hit
TAGTAGTACTTACACAAACTACGCAGACTCTGTGAAGGGCCGATTCACCA64600.11515568210400484No Hit
CTTTTATTACTGTGCGAGAATTCACTACGGAAAACATGGTTCTGACTACT64370.11474568509341782No Hit
GCCCTGCACAGGCCCGATGTCTACTTGCTGCCACCAGCCCGGGAGCAGCT63060.11241048472877004No Hit
AGCCTGGAGGGTCCCTGAGACTCTCCTGTACAGCCTCTGGATTCACCTTC61310.10929094225691233No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59910.10679530827942617No Hit
ATCTCACCCCGTTGACACGGTTAGTTTGCATGCACACACAGAGCGGCCAG57430.10237447094787921No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)