FastQCFastQC Report
Thu 21 Nov 2024
EGAF00005111973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005111973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2135856
Total Bases215.7 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44500.20834737922406757No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23330.10923021027634823No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)