FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005112566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005112566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49649868
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA66950.06.64825555-59
AGCGTCG305100.06.035899
TCGCCGT82000.05.551823655-59
GCGTCGT284050.05.462083145
ATCGGAA455150.05.336169145
CGTCGTG282350.05.18684145
AGATCGG464250.05.169106145
GAGCGTC368350.05.11764248
GCGTCGG44102.1445885E-95.0963874145
GATCGGA431250.05.0266814145
GCCGTAT92750.05.00214155-59
Produced by FastQC (version 0.11.5)