FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005112699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005112699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2485045
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGT57330.23070004768525318No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48160.19379930745720902No Hit
ATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGTCTT35910.14450442547318057No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCGCGTATGCCGT30660.12337804748002552No Hit
ACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGTCTTCT26830.10796585172501906Illumina PCR Primer Index 7 (95% over 22bp)
ATACACATCTCCGAGCCCACGAGACTCGACGTCATCGCGTATGCCGTCTT24890.10015915204754844No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)