FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005112782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005112782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1956307
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69570.3556190311643316No Hit
GTCTATTACTGTGCGAGAGTGGCAGTGGCTCTTACATTGTCACGGCGCGA44420.22706047670432097No Hit
GTAATAGACAGCCGTGTCCGCGGCGGTCACAGAACTCAGGGTCAGGGAAA34880.17829512443599088No Hit
GTCCTGGGCCCATTCTGTGTTGACGCAGCCGCCCTCAATATCTGCGGCCT28820.14731839123409568No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCACCCTCC26860.13729951382886224No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA25910.13244342529061134No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTAC24960.12758733675236045No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA20950.10708953144879611No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG20200.10325577733965068No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)