FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005112921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005112921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3005824
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTATTACTGTGCTGCATGGGATGACAGAGTAAATGGTGTGGTCTTCGG74520.2479187071498531No Hit
GTGTATTACTGTGCGAGGGGCCTTCCCAGGCGGGGACCTTATCCCCTTTT67080.22316675893199336No Hit
GTAATAATCAGCCTCATCCTCAGACTGGAGTCCACTGATGGCCAGGGAGG62560.2081292850146915No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC58440.19442256100157562No Hit
GTGCAGGGTCCTTGGCCCAGTCTGTGTTGATTCAGCCACCCTCAGCGTCT56060.18650459907166886No Hit
CCTCACTCACTGTGCAGGGTCCTTGGCCCAGTCTGTGTTGATTCAGCCAC50110.16670969424690202No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA48850.16251783204871612No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA44480.14797938934548396No Hit
GTAATACACAGCCGTGTCGTCGACTCTGAGGCTGTTCATTTGCAGATATA44180.14698132691734445No Hit
TACTAATTCTCAGCGGGCCCCAGGAGTCCCTGACCGAATCTCTGGCTCCA42540.14152525231018181No Hit
GACCTAGGACGGTCACTTTGGTCCCTCCGCCGAAGACCACACCATTTACT40530.13483823404164713No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT39800.13240961546650767No Hit
GTGTTGATTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCAC38420.12781852829706594No Hit
TATTTATTGAGGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGG36760.12229591619469403No Hit
GTCCTTGGCCCAGTCTGTGTTGATTCAGCCACCCTCAGCGTCTGGGACCC35720.1188359664438104No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT34190.11374584806029893No Hit
TTATTACTGTGCTGCATGGGATGACAGAGTAAATGGTGTGGTCTTCGGCG33860.11264797938934548No Hit
GAGTAAATGGTGTGGTCTTCGGCGGAGGGACCAAAGTGACCGTCCTAGGT32490.10809016096750841No Hit
CTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGG32110.1068259485585317No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCC32060.10665960482050846No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCA31520.10486309244985735No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCA31080.10339926755525274No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG30880.10273389260315974No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA30070.10003912404718306No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)