FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005112922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005112922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3005824
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTATTACTGTGCTGCATGGGATGACAGAGTAAATGGTGTGGTCTTCGG73880.24578950730315546No Hit
GTAATAATCAGCCTCATCCTCAGACTGGAGTCCACTGATGGCCAGGGAGG67880.22582825874036538No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC59040.1964186858578546No Hit
GTGTATTACTGTGCGAGGGGCCTTCCCAGGCGGGGACCTTATCCCCTTTT55380.18424232423455267No Hit
GTGCAGGGTCCTTGGCCCAGTCTGTGTTGATTCAGCCACCCTCAGCGTCT46860.1558973512753907No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA46790.15566447004215817No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46130.15346873270025124No Hit
CCTCACTCACTGTGCAGGGTCCTTGGCCCAGTCTGTGTTGATTCAGCCAC45080.14997551420176297No Hit
GTAATACACAGCCGTGTCGTCGACTCTGAGGCTGTTCATTTGCAGATATA44420.14777977685985608No Hit
GACCTAGGACGGTCACTTTGGTCCCTCCGCCGAAGACCACACCATTTACT44380.14764670186943746No Hit
TACTAATTCTCAGCGGGCCCCAGGAGTCCCTGACCGAATCTCTGGCTCCA40980.13633532768385642No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT40530.13483823404164713No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA38980.12968157816292636No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT35550.11827039773453137No Hit
TTATTACTGTGCTGCATGGGATGACAGAGTAAATGGTGTGGTCTTCGGCG35350.11760502278243835No Hit
GTGTTGATTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCAC34650.11527621045011285No Hit
GCCTTGGGCTGACCTAGGACGGTCACTTTGGTCCCTCCGCCGAAGACCAC33630.11188279819443854No Hit
TATTTATTGAGGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGG33570.11168318570881063No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCA32970.1096870608525316No Hit
CCTCTGAGGAGCTTCACGCCAACAAGGCCACACTGGTGTGTCTCATAAGT32460.10799035472469447No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT32120.10685921730613636No Hit
CCATTTACTCTGTCATCCCATGCAGCACAGTAATAATCAGCCTCATCCTC31830.1058944236256015No Hit
GTCCTTGGCCCAGTCTGTGTTGATTCAGCCACCCTCAGCGTCTGGGACCC31520.10486309244985735No Hit
CTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGG31290.10409791125495038No Hit
GTATGTAGACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC30840.10260081761274115No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG30610.10183563641783418No Hit
GAGTAAATGGTGTGGTCTTCGGCGGAGGGACCAAAGTGACCGTCCTAGGT30540.10160275518460163No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)