FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005113434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005113434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3001751
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG116650.38860651666310764No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT41380.13785287320633854No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA41380.13785287320633854No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40600.13525438985445495No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA40590.13522107596532823No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCAGTAC35030.11669855361087578No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT30370.10117428127782752No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)