FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005113588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005113588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61461762
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCGA73500.019.1473244
TATCGAA77200.018.5208515
CCCGTAT91100.018.3836651
ACGCAAT34450.018.14526231
CGTATCG87900.016.9825483
TCGTATG38200.016.09783244
CCGTATC106750.015.0258092
ATCGAAG132550.013.161436
CTCCGAT89300.012.4354121
CGTATGC52100.012.10659645
CGCGTTA38900.011.67919834
CACGCAA58300.011.03610530
CCGGTAA47650.010.7051331
GTCGCGT44700.010.46448732
TCGAAGG186050.010.283227
CCCGAAT77500.010.2223791
ACCGAAT46150.010.1880442
CGCGTAT6000.010.1568511
TCCGATT93100.010.0038432
CTCGTAT62650.09.98948443
Produced by FastQC (version 0.11.5)