FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005114032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57008262
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATATTCGTGTCGATCTGTGGCACAGTAGTACACGGCTGAGTCCTC979420.17180316775838564No Hit
CCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCA785650.13781335764980873No Hit
CCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACAC750670.13167740493474436No Hit
CCAGGCTTCACCAAGCCTCCCCCAGACTCCACCAGTTGCACCTCACACTG704840.12363821931635102No Hit
CCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACA663900.11645680410323682No Hit
CTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTTCTCGATGGGGGCTGGG619840.10872809979718379No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCC614630.10781419717724423No Hit
CTCGGTTTTAAGGCTGTTCATTTGCAGATATGTCGTGTTGAGTGAATCAT611630.10728795766480305No Hit
CGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAA577070.10122567848148045No Hit
CACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAG572030.10034159610057924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)